Category Archives: Publishing

New Textbook on Metabolic Control Analysis

New Textbook Published I am pleased to announce the publication of my new textbook: Introduction to Metabolic Control Analysis   “This book is an introduction to control in biochemical pathways. It introduces students to some of the most important concepts … Continue reading

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Repeatable, Reproducible [and Replictable]

There appears to be great confusion in the scientific and social sciences communities on the meaning of words related to certain aspects of the scientific method. The ArXiv paper by Lorena Barba “Terminologies for Reproducible Research” highlights the confused state … Continue reading

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Another Inhibition Pathway Diagram using TikZ

Here is another pathway diagram I needed to draw using TikZ. IN this case I needed an inhibited step. This was more tricky because I needed the inhibition line to point midway to a reaction but without touching the reaction … Continue reading

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Drawing a Pathway Fragment with Inhibition using Tikz

Here is another quick pathway fragment I needed today. This won’t scale well because I’ve used some fixed dimensions eg the width of the lines and the size of the text. But these are easily adjusted if you want to … Continue reading

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Drawing a ‘Futile’ Cycle using Tikz

I was in need of a diagram of a futile cycle. I tried illustator but I didn’t have the right LaTeX fonts so the figure did blend well with the rest of the document. I decided to make one using … Continue reading

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Tikz Code for Drawing Metabolic Feedback Loops

I needed some figures that displayed a variety of different negative feedback loops so I created these using Tikz. Nothing particularly special. There are some absolute distances in the code which perhaps could be removed to make it more generic. … Continue reading

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The Confusion of Modern Textbooks – Stylistic Sugar

I’ve been looking for a textbook on statistics for a class I’ll teach in the autumn term. While the content of many textbooks might be ok the way the information is presented makes them difficult to read – at least … Continue reading

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New Modeling Book Published

I am happy to announce the publication of my new book this March: Essentials of Biochemical Modeling.┬áComputer models of biochemical systems are starting to play an increasingly important role in modern systems and synthetic biology. This monograph introduces students to … Continue reading

Posted in Enzyme Kinetics, Modeling, Molecular Biology, Pathways, Publishing, Textbooks | Leave a comment

PGF 3.0.0 is now Available

To those of use who use PGF and related packages, version 3.0.0 has just been released on CTAN. I include below a summary of the changes I retrieved from the sourceforge site. The manual for PGF 3.0.0 can be obtained … Continue reading

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Converting Excel Tables to LaTeX Tables

Today I had the problem of converting an Excel table of values into a LaTeX table. I could have done it by hand but the table had over 400 entries so that would have been a bit tedious. Instead I … Continue reading

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